Gdc legacy archive download normal data

Note: Downloading controlled access data requires the use of an authentication token. See Getting Started: Authentication for details. See Getting Started: Legacy Archive for details. To download a file, users can pass UUID s to the data endpoint. This example demonstrates downloading a single file from the GDC. Note: This method supports downloading a limited number of files at one time. To log out of the GDC, click the username in the top right corner of the screen, and select the Logout option.

Number of cases associated with the files. Total file size. The Cart page also displays two tables: File count by project : Breaks down the files and cases by each project. File count by authorization level : Breaks down the files in the cart by authorization level. The table gives the folowing information for each file in the cart: Access : Displays whether the file is open or controlled access. Users must login to the GDC Portal and have the appropriate credentials to access these files.

File Name : Name of the file. Clicking the link will bring the user to the File Summary Page. Cases : How many cases does the file contain. Clicking the link will bring the user to the Case Summary Page. Project : The Project that the file belongs to. Clicking the link will bring the user to the Project Summary Page. Category : Type of data. Format : The file format. Size : The size of the file. Annotations : Whether there are any annotations.

Download Options The following buttons on the Cart page allows users to download files that are related to the ones in the cart. Metadata: GDC harmonized clinical, biospecimen, and file metadata associated with the files in the cart. A manifest file contains a list of the UUIDs that correspond to the files in the cart. Cart: Download the files in the Cart directly through the browser.

Users have to be cautious of the amount of data in the cart since this option will not optimize bandwidth and will not provide resume capabilities. Remove from Cart: Remove all files or unauthorized files from the cart. It is used to download metadata files associated with the files in the cart. Below is an example of the contents of a manifest file used for download: Manifest id filename md5 size state 4ea9cfdaad59cced mdanderson.